nav emailalert searchbtn searchbox tablepage yinyongbenwen piczone journalimg journalInfo journalinfonormal searchdiv searchzone qikanlogo popupnotification paper paperNew
2026, 03, v.42 1012-1021
登革病毒NS2B-NS3pro抑制剂的研究进展
基金项目(Foundation):
邮箱(Email): xuke@ivdc.chinacdc.cn;zhouyubai@bjut.edu.cn;
DOI: 10.13242/j.cnki.bingduxuebao.260073
投稿时间: 2026-03-05
投稿日期(年): 2026
修回时间: 2026-04-13
终审时间: 2026-05-06
终审日期(年): 2026
审稿周期(年): 1
发布时间: 2026-05-08
出版时间: 2026-05-08
网络发布时间: 2026-05-08
移动端阅读
摘要:

登革病毒(Dengue virus, DENV)是全球流行范围最广、疾病负担最重的虫媒病毒,目前临床仍缺乏安全有效的抗病毒治疗方法。DENV非结构蛋白NS2B-NS3蛋白酶(NS2B-NS3pro)在病毒多聚蛋白加工和免疫逃逸中发挥关键作用,是抗DENV药物研发的核心靶点。当前,NS2B-NS3pro抑制剂的开发策略已呈多元化态势:结构指导的策略凭借对NS2B-NS3pro构象特征及动态变化的深入解析,为正构/别构抑制剂的理性设计与虚拟筛选提供了关键依据;而经验驱动与高通量筛选则拓宽了先导化合物的来源。然而,现有研究虽在先导分子发现和机制理解上取得显著进展,但其临床转化仍受制于化合物稳定性、成药性及体内有效性等瓶颈。本文综述了近年来在NS2BNS3pro抑制剂开发方面的最新进展,并对整合结构生物学、计算化学与宿主靶点研究的未来趋势进行展望,旨在为高效、安全的抗DENV药物开发提供参考。

Abstract:

Dengue virus(DENV) is one of the most widespread arboviral pathogens worldwide and imposes a substantial global disease burden, yet safe and effective antiviral therapies remain lacking. The DENV nonstructural NS2B– NS3 protease(NS2B– NS3 pro) plays a central role in viral polyprotein processing and immune evasion, making it a key target for antiviral drug development. In recent years, strategies for developing NS2B – NS3 pro inhibitors have become increasingly diverse. Structure-based approaches, enabled by detailed insights into the conformational features and dynamic behavior of NS2 B–NS3 pro, have provided a strong foundation for the rational design and virtual screening of both orthosteric and allosteric inhibitors. Meanwhile, empirical approaches and high-throughput screening have expanded the repertoire of potential lead compounds. Despite significant progress in lead discovery and mechanistic understanding, clinical translation remains constrained by challenges related to compound stability, druggability, and in vivo efficacy. This review summarizes recent advances in NS2 B–NS3 pro inhibitor development and highlights future directions involving the integration of structural biology, computational chemistry, and host-targeted strategies, with the aim of facilitating the development of potent and safe anti-dengue therapeutics.

参考文献

[1]Ulgheri FM, Bernardes BG, Lancellotti M. Decoding dengue:a global perspective, history, role, and challenges[J]. Pathogens, 2025, 14(9):954. DOI:10. 3390/pathogens14090954.

[2]Roy SK, Bhattacharjee S. Dengue virus:epidemiology, biology, and disease aetiology[J]. Can J Microbiol, 2021, 67(10):687-702. DOI:10. 1139/cjm-2020-0572.

[3]田芳桢,郑岚菱,顾天梦,等.基于多重PCR的登革病毒基因组高通量靶向快速测序方法的建立[J].病毒学报,2025, 41(6):1847-1856. DOI:10. 13242/j. cnki.bingduxuebao. 250280.

[4]Postler TS, Beer M, Blitvich BJ, et al. Renaming of the genus Flavivirus to Orthoflavivirus and extension of binomial species names within the family Flaviviridae[J]. Arch Virol, 2023, 168(9):224. DOI:10. 1007/s00705-023-05835-1.

[5]Haider N, Hasan MN, Onyango J, et al. Global dengue epidemic worsens with record 14 million cases and 9000deaths reported in 2024[J]. Int J Infect Dis, 2025, 158:107940. DOI:10. 1016/j. ijid. 2025. 107940.

[6]Mallapaty S. The pathogens that could spark the next pandemic[J]. Nature, 2024, 632(8025):488. DOI:10. 1038/d41586-024-02513-3.

[7]WHO. Dengue and severe dengue[EB/OL].(2024-4-23)[2026-2-1]. https://www. who. int/health-topics/dengue-and-severe-dengue.

[8]Sinha S, Singh K, Ravi Kumar YS, et al. Dengue virus pathogenesis and host molecular machineries[J]. J Biomed Sci, 2024, 31(1):43. DOI:10. 1186/s12929-024-01030-9.

[9]刘铁柱,李建东.登革热病原学与实验室检测技术研究进展[J].病毒学报,2024, 40(3):588-597. DOI:10. 13242/j. cnki. bingduxuebao. 004513.

[10]颜威敏,汪伟.登革热疫苗研究进展[J].病毒学报,2025, 41(6):1969-1976. DOI:10. 13242/j. cnki.bingduxuebao. 240298.

[11]Salaemae W, Junaid M, Angsuthanasombat C, et al.Structure-guided mutagenesis of active site residues in the dengue virus two-component protease NS2B-NS3[J]. J Biomed Sci, 2010, 17(1):68. DOI:10. 1186/1423-0127-17-68.

[12]Lin KH, Nalivaika EA, Prachanronarong KL, et al.Dengue protease substrate recognition:binding of the prime side[J]. ACS Infect Dis, 2016, 2(10):734-743.DOI:10. 1021/acsinfecdis. 6b00131.

[13]Wahaab A, Mustafa BE, Hameed M, et al. Potential role of flavivirus NS2B-NS3 proteases in viral pathogenesis and anti-flavivirus drug discovery employing animal cells and models:a review[J].Viruses, 2022, 14(1):44. DOI:10. 3390/v14010044.

[14]Starvaggi J, Previti S, ZappalàM, et al. The inhibition of NS2B/NS3 protease:a new therapeutic opportunity to treat dengue and zika virus infection[J]. Int J Mol Sci, 2024, 25(8):4376. DOI:10. 3390/ijms25084376.

[15]Schechter I. Mapping of the active site of proteases in the 1960s and rational design of inhibitors/drugs in the1990s[J]. Curr Protein Pept Sci, 2005, 6(6):501-512. DOI:10. 2174/138920305774933286.

[16]Wu H, Bock S, Snitko M, et al. Novel dengue virus NS2B/NS3 protease inhibitors[J]. Antimicrob Agents Chemother, 2015, 59(2):1100-1109. DOI:10. 1128/aac. 03543-14.

[17]Cavina L, Bouma MJ, Gironés D, et al. Orthoflaviviral inhibitors in clinical trials, preclinical in vivo efficacy targeting NS2B-NS3 and cellular antiviral activity via competitive protease inhibition[J]. Molecules, 2024, 29(17):4047. DOI:10. 3390/molecules29174047.

[18]Erbel P, Schiering N, D’Arcy A, et al. Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus[J]. Nat Struct Mol Biol, 2006, 13(4):372-373. DOI:10. 1038/nsmb1073.

[19]Chandramouli S, Joseph JS, Daudenarde S, et al.Serotype-specific structural differences in the proteasecofactor complexes of the dengue virus family[J]. J Virol, 2010, 84(6):3059-3067. DOI:10. 1128/jvi. 02044-09.

[20]Quek JP, Ser Z, Chew BLA, et al. Dynamic interactions of post cleaved NS2B cofactor and NS3protease identified by integrative structural approaches[J]. Viruses, 2022, 14(7):1440. DOI:10. 3390/v14071440.

[21]Noble CG, Seh CC, Chao AT, et al. Ligand-bound structures of the dengue virus protease reveal the active conformation[J]. J Virol, 2012, 86(1):438-446.DOI:10. 1128/jvi. 06225-11.

[22]Agback T, Lesovoy D, Han X, et al. Combined NMR and molecular dynamics conformational filter identifies unambiguously dynamic ensembles of Dengue protease NS2B/NS3pro[J]. Commun Biol, 2023, 6:1193.DOI:10. 1038/s42003-023-05584-6.

[23]Agback P, Lesovoy DM, Han X, et al. 1H, 13C and15N resonance assignment of backbone and IVL-methyl side chain of the S135A mutant NS3pro/NS2Bprotein of Dengue II virus reveals unique secondary structure features in solution[J]. Biomol NMR Assign, 2022, 16(1):135-145. DOI:10. 1007/s12104-022-10071-w.

[24]Lim L, Dang M, Roy A, et al. Curcumin allosterically inhibits the dengue NS2B-NS3 protease by disrupting its active conformation[J]. ACS Omega, 2020, 5(40):25677-25686. DOI:10. 1021/acsomega. 0c00039.

[25]Lee WHK, Liu W, Fan JS, et al. Dengue virus protease activity modulated by dynamics of protease cofactor[J]. Biophys J, 2021, 120(12):2444-2453.DOI:10. 1016/j. bpj. 2021. 04. 015.

[26]Yin Z, Patel SJ, Wang WL, et al. Peptide inhibitors of dengue virus NS3 protease. Part 1:Warhead[J].Bioorg Med Chem Lett, 2006, 16(1):36-39. DOI:10. 1016/j. bmcl. 2005. 09. 062.

[27]Behrouz S, Kühl N, Klein CD. N-sulfonyl peptidehybrids as a new class of dengue virus protease inhibitors[J]. Eur J Med Chem, 2023, 251:115227. DOI:10. 1016/j. ejmech. 2023. 115227.

[28]Di L. Strategic approaches to optimizing peptide ADME properties[J]. AAPS J, 2015, 17(1):134-143. DOI:10. 1208/s12248-014-9687-3.

[29]Khalili NSD, Khawory MH, Salin NH, et al. Synthesis and biological activity of imidazole phenazine derivatives as potential inhibitors for NS2B-NS3 dengue protease[J]. Heliyon, 2024, 10(2):e24202. DOI:10. 1016/j.heliyon. 2024. e24202.

[30]Murtuja S, Das S, Das Jana I, et al. Identification of novel thiazole derivatives as flaviviral protease inhibitors effective against Dengue(DENV2)and Japanese encephalitis viruses[J]. Antimicrob Agents Chemother,2025, 69(4):e01651-e01624. DOI:10. 1128/aac. 01651-24.

[31]Lang J, Koch J, Dutta SK, et al. Discovery of pyrazole-3-carboxylic acid derivatives as dengue virus protease inhibitors with antiviral activity[J]. ACS Med Chem Lett, 2025, 16(8):1592-1600. DOI:10. 1021/acsmedchemlett. 5c00219.

[32]del Rosario García-Lozano M, Dragoni F, Gallego P,et al. Piperazine-derived small molecules as potential Flaviviridae NS3 protease inhibitors. In vitro antiviral activity evaluation against Zika and Dengue viruses[J].Bioorg Chem, 2023, 133:106408. DOI:10. 1016/j.bioorg. 2023. 106408. DOI:10. 1016/j.bioorg. 2023. 106408.

[33]Yildiz M, Ghosh S, Bell JA, et al. Allosteric inhibition of the NS2B-NS3 protease from dengue virus[J]. ACS Chem Biol, 2013, 8(12):2744-2752. DOI:10. 1021/cb400612h.

[34]Yao Y, Huo T, Lin YL, et al. Discovery, X-ray crystallography and antiviral activity of allosteric inhibitors of flavivirus NS2B-NS3 protease[J]. J Am Chem Soc, 2019, 141(17):6832-6836. DOI:10. 1021/jacs. 9b02505.

[35]Mufti IU, Ain QU, Malik A, et al. Exploring antiviral activity of Betanin and Glycine Betaine against dengue virus type-2 in transfected Hela cells[J]. Microb Pathog, 2024, 195:106894. DOI:10. 1016/j.micpath. 2024. 106894.

[36]Hou T, Wang J, Li Y, et al. Assessing the performance of the MM/PBSA and MM/GBSA methods. 1. the accuracy of binding free energy calculations based on molecular dynamics simulations[J]. J Chem Inf Model, 2011, 51(1):69-82. DOI:10. 1021/ci100275a.

[37]Purohit P, Sahoo S, Panda M, et al. Targeting the DENV NS2B-NS3 protease with active antiviral phytocompounds:structure-based virtual screening,molecular docking and molecular dynamics simulation studies[J]. J Mol Model, 2022, 28(11):365. DOI:10. 1007/s00894-022-05355-w.

[38]Ferreira LLG, Andricopulo AD. ADMET modeling approaches in drug discovery[J]. Drug Discov Today,2019, 24(5):1157-1165. DOI:10. 1016/j.drudis. 2019. 03. 015.

[39]da Costa RA, da Rocha JAP, Pinheiro AS, et al. A computational approach applied to the study of potential allosteric inhibitors protease NS2B/NS3 from dengue virus[J]. Molecules, 2022, 27(13):4118. DOI:10. 3390/molecules27134118.

[40]Nasir A, Samad A, Ajmal A, et al. Identification of novel and potential inhibitors against the dengue virus NS2B/NS3 protease using virtual screening and biomolecular simulations[J]. Int J Biol Macromol,2024, 272:132855. DOI:10. 1016/j.ijbiomac. 2024. 132855.

[41]Poola AA, Prabhu PS, Krishna Murthy TP, et al.Ligand-based pharmacophore modeling and QSAR approach to identify potential dengue protease inhibitors[J]. Front Mol Biosci, 2023, 10:1106128. DOI:10. 3389/fmolb. 2023. 1106128.

[42]Chongjun Y, Nasr AMS, Latif MAM, et al. Predicting repurposed drugs targeting the NS3 protease of dengue virus using machine learning-based QSAR, molecular docking, and molecular dynamics simulations[J]. SAR QSAR Environ Res, 2024, 35(8):707-728. DOI:10. 1080/1062936X. 2024. 2392677.

[43]Hanson G, Adams J, Kepgang DIB, et al. Machine learning and molecular docking prediction of potential inhibitors against dengue virus[J]. Front Chem, 2024,12:1510029. DOI:10. 3389/fchem. 2024. 1510029.

[44]Gautam S, Thakur A, Kumar M. I-DENV:development of QSAR based regression models for predicting inhibitors targeting non-structural(NS)proteins of dengue virus[J]. Front Pharmacol, 2025,16:1605722. DOI:10. 3389/fphar. 2025. 1605722.

[45]Lin CL, Kiu YT, Kan JY, et al. The antiviral activity of varenicline against dengue virus replication during the post-entry stage[J]. Biomedicines, 2023, 11(10):2754. DOI:10. 3390/biomedicines11102754.

[46]Palacios-Rápalo SN, Farfan-Morales CN, CorderoRivera CD, et al. An ivermectin–atorvastatin combination impairs nuclear transport inhibiting dengue infection in vitro and in vivo[J]. iScience, 2023, 26(12):108294. DOI:10. 1016/j. isci. 2023. 108294.

[47]Ismat F, Tariq A, Shaheen A, et al. Inhibition of NS2B-NS3 protease from all four serotypes of dengue virus by punicalagin, punicalin and ellagic acid identified from Punica granatum[J]. J Biomol Struct Dyn, 2025, 43(14):7604-7619. DOI:10. 1080/07391102. 2024. 2314258.

[48]Jani NA, Maarof NI, Zahari MMFM, et al.Phytochemical profiling of the essential oils from three Curcuma species and their in vitro and in silico dengue protease inhibition activity[J]. Nat Prod Res, 2024, 38(6):926-932. DOI:10. 1080/14786419. 2023. 2208256.

[49]Sivasothy Y. Natural DENV-2 NS2B/NS3 protease inhibitors from Myristica cinnamomea King[J]. Trop Biomed, 2021, 38(2):79-84. DOI:10. 47665/tb. 38. 2. 044.

[50]Coronado MA, Gering I, Sevenich M, et al. The importance of epigallocatechin as a scaffold for drug development against flaviviruses[J]. Pharmaceutics,2023, 15(3):803. DOI:10. 3390/pharmaceutics15030803.

[51]Mustafa NF, Cheng KK, Nadri MH, et al. Discovery of azaleatin as a potential allosteric inhibitor for dengue NS2B-NS3 protease using in vitro and in silico studies[J]. J Biomol Struct Dyn, 2025, 43(14):7759-7770.DOI:10. 1080/07391102. 2024. 2335296.

[52]Lo IW, Liao GY, Lee JC, et al. Novel Aporphine-and Proaporphine–Clerodane Hybrids Identified from the Barks of Taiwanese Polyalthia longifolia(Sonn.)Thwaites var. pendula with Strong Anti-DENV2Activity[J]. Pharmaceuticals, 2022, 15(10):DOI:10. 3390/ph15101218. DOI:10. 3390/ph15101218.

[53]Borgo J, Rodríguez-Martínez A, Wagner MS, et al. A promising anti-dengue virus carboxylated-sesquiterpene lactone from Stevia entreriensis(Asteraceae)[J]. ACS Omega, 2025, 10(41):48228-48241. DOI:10. 1021/acsomega. 5c05127.

[54]Lin YF, Lai HC, Lin CS, et al. Discovery of potent dengue virus NS2B-NS3 protease inhibitors among glycyrrhizic acid conjugates with amino acids and dipeptides esters[J]. Viruses, 2024, 16(12):1926.DOI:10. 3390/v16121926.

[55]Zhu X, Gao X, Wu Y, et al. Eltrombopag, an FDAapproved drug, inhibits dengue virus type 2 by targeting NS2B-NS3 protease[J]. Virol Sin, 2025, 40(3):439-450. DOI:10. 1016/j. virs. 2025. 05. 009.

[56]Lang J, Dutta SK, Leuthold MM, et al. Antiviral drug discovery with an optimized biochemical dengue protease assay:Improved predictive power for antiviral efficacy[J]. Antivir Res, 2025, 234:106053. DOI:10. 1016/j. antiviral. 2024. 106053.

[57]Lombardi L, Del Genio V, Albericio F, et al.Advances in peptidomimetics for next-generation therapeutics:strategies, modifications, and applications[J]. Chem Rev, 2025, 125(15):7099-7166. DOI:10. 1021/acs. chemrev. 4c00989.

[58]Grabski H, Grabska S, Abagyan R. Identifying allosteric small-molecule binding sites of inactive NS2BNS3 proteases of pathogenic Flaviviridae[J]. Viruses,2024, 17(1):6. DOI:10. 3390/v17010006.

[59]Maus H, Gellert A, Englert OR, et al. Designing photoaffinity tool compounds for the investigation of the DENV NS2B–NS3 protease allosteric binding pocket[J]. RSC Med Chem, 2023, 14(11):2365-2379.DOI:10. 1039/d3md00331k.

[60]Saleem HN, Kousar S, Jiskani AH, et al. Repurposing of investigational cancer drugs:Early phase discovery of dengue virus NS2B/NS3 protease inhibitors[J]. Arch Pharm, 2023, 356(11):e2300292. DOI:10. 1002/ardp. 202300292.

[61]Kan JY, Chang YJ, Lai HC, et al. Darunavir inhibits dengue virus replication by targeting the hydrophobic pocket of the envelope protein[J]. Biochem Pharmacol,2025, 235:116839. DOI:10. 1016/j.bcp. 2025. 116839.

[62]Huang YJ, Cheng TL, Wang YT, et al. Exploring the therapeutic potential of DV-B-120 as an inhibitor of dengue virus infection[J]. J Virol, 2024, 98(4):e01258-e01223. DOI:10. 1128/jvi. 01258-23.

[63]Hao J, Li J, Zhang Z, et al. NLRC5 restricts dengue virus infection by promoting the autophagic degradation of viral NS3 through E3 ligase CUL2(cullin 2)[J].Autophagy, 2023, 19(4):1332-1347. DOI:10. 1080/15548627. 2022. 2126614.

[64]Bagga T, Tulsian NK, Mok YK, et al. Mapping of molecular interactions between human E3 ligase TRIM69 and Dengue virus NS3 protease using hydrogen–deuterium exchange mass spectrometry[J]. Cell Mol Life Sci, 2022, 79(5):233. DOI:10. 1007/s00018-022-04245-x.

[65]Udawatte DJ, Lang DM, Currier JR, et al. Dengue virus downregulates TNFR1-and TLR3-stimulated NF-κB activation by targeting RIPK1[J]. Front Cell Infect Microbiol, 2022, 12:926036. DOI:10. 3389/fcimb. 2022. 926036.

[66]Li J, Lim SP, Beer D, et al. Functional profiling of recombinant NS3 proteases from all four serotypes of dengue virus using tetrapeptide and octapeptide substrate libraries[J]. J Biol Chem, 2005, 280(31):28766-28774. DOI:10. 1074/jbc. m500588200.

基本信息:

DOI:10.13242/j.cnki.bingduxuebao.260073

中图分类号:R91

引用信息:

[1]朱浩嘉,邱丰,曹鹏,等.登革病毒NS2B-NS3pro抑制剂的研究进展[J].病毒学报,2026,42(03):1012-1021.DOI:10.13242/j.cnki.bingduxuebao.260073.

投稿时间:

2026-03-05

投稿日期(年):

2026

修回时间:

2026-04-13

终审时间:

2026-05-06

终审日期(年):

2026

审稿周期(年):

1

发布时间:

2026-05-08

出版时间:

2026-05-08

网络发布时间:

2026-05-08

检 索 高级检索

引用

GB/T 7714-2015 格式引文
MLA格式引文
APA格式引文